CDS

Accession Number TCMCG057C20839
gbkey CDS
Protein Id XP_018483467.1
Location 40790602..40791927
Gene LOC108854416
GeneID 108854416
Organism Raphanus sativus

Protein

Length 441aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018627965.1
Definition PREDICTED: UBP1-associated protein 2B [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12741        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000122        [VIEW IN EMBL-EBI]
GO:0001837        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003730        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005667        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005849        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006378        [VIEW IN EMBL-EBI]
GO:0006379        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007568        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008219        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009692        [VIEW IN EMBL-EBI]
GO:0009693        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010150        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010817        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0031123        [VIEW IN EMBL-EBI]
GO:0031124        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042445        [VIEW IN EMBL-EBI]
GO:0042446        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043449        [VIEW IN EMBL-EBI]
GO:0043450        [VIEW IN EMBL-EBI]
GO:0043631        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044798        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048366        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048513        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048762        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060485        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090575        [VIEW IN EMBL-EBI]
GO:0090693        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:1900673        [VIEW IN EMBL-EBI]
GO:1900674        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCAGAAAGGAAGAGAAAGCTCGAACCTCAATCCAACGACGACGCCGCCACAGAGGAGCAACCCCCGCAGAAGCAGCAGCTCCAATTCGAAAACGGCGACGAAGGAATCATCACCACAGAGATCAACAAAAAGGAAAACGACGACGATAGAGACGAGAATCAACGCCCTGAGGAAGACGACGGAGAGCCGATCGAAGATCTCCTGGAACCGTTTTCGAAGGAACAGCTCTCGATTCTCCTCAAGGAAGCAGCGGAGAAGCACCGCGACGTGGCCGATCGGATCCGAATCGTTGCGGACGAGGATCCGGTTCACCGCAAGATCTTCGTGCACGGATTCGCGTGGGACACCAAAGCGGACGCGCTAATCAAAGCGTTTAAGCAGTATGGAGAGATCGAGGATTGCAAATGCGTCGTCGATAAGGTCACGGGACAGTCCAAAGGCTACGGGTTTATCCTATTCAAGTCGCGTTCCGGCGCTCGCGGGGCTCTCAAGCAGCCTCAGAAGAAGATAGGGACTCGTATGGCTGCGTGTCAGTTAGCTTCCATGGGACCTGTTCAAGGAGGAGGGAACACTGTGGTGGGGGCGAGTTCTCAGCATTTTAACCCTGAGCATGTTCAGAGGAAGATCTATGTTAGTAACGTGAGCGCGGAGATTGATCCGCAGAGGTTGCTTGAGTTTTTCTCGAGGTTTGGGGAGGTGGAAGAAGGTCCGTTGGGGCTTGATAAAGCTACTGGGAGACCTAAAGGTTTCACTTTGTTTGTGTATAAGACTGCGGAGAGTGCTAAGAAGGCGTTGGAGGAGCCGCATAAGAGCTTTGAAGGCCATGTGTTGCATTGCCATAAAGCTAACGACGGGCCTAAACCTGTTAAGCAGCAGCATCAGCATCACCAGAACAATTATAATCAACGTTCACGCTACCAAAGGAACGAAGACACTGGTTACGGTGCAAGTGGAGGACATGGGCATTTCTTAGCTGGTAATGGTAATAACCAGGGGTTAAACCCAGCAATTGGTCAGGCCATCACGGCGGCTTTGCTGGCGTCTCAAGGTGCTGGAGTGGGTATGAACCAAGCGTTTGGACAGGCGTTGTTGGGGACTTTGGGGGCGCCTAGCCCAGGAGCGGTAGGTGGAATGCCAAGTGGCTATGGTACTCAAGCGAATATGACACCAGAGGTCTTTCCTGGTTACGGTTTCCAAGGTGGTTATCAGGGAGGTTATCAGACTCAGCTTCCTGGTCAGGGAGGTTATCAGAGTCAGCAACCTGGCCAGGGCGGTGCTGGAAGAGGGCAGCATGGTTTAGGGTATGGTGGTCAGTACATGTAA
Protein:  
MAERKRKLEPQSNDDAATEEQPPQKQQLQFENGDEGIITTEINKKENDDDRDENQRPEEDDGEPIEDLLEPFSKEQLSILLKEAAEKHRDVADRIRIVADEDPVHRKIFVHGFAWDTKADALIKAFKQYGEIEDCKCVVDKVTGQSKGYGFILFKSRSGARGALKQPQKKIGTRMAACQLASMGPVQGGGNTVVGASSQHFNPEHVQRKIYVSNVSAEIDPQRLLEFFSRFGEVEEGPLGLDKATGRPKGFTLFVYKTAESAKKALEEPHKSFEGHVLHCHKANDGPKPVKQQHQHHQNNYNQRSRYQRNEDTGYGASGGHGHFLAGNGNNQGLNPAIGQAITAALLASQGAGVGMNQAFGQALLGTLGAPSPGAVGGMPSGYGTQANMTPEVFPGYGFQGGYQGGYQTQLPGQGGYQSQQPGQGGAGRGQHGLGYGGQYM